The client, Bioproximity LLC, contracted us to analyze their “Omics” data with R Bioconductor packages (clusterProfiler, RITAN, and MS-EmpiRe).
The workflow for this project involved four steps:
- The client described their problem and pointed us to a Bioconductor package that might be useful to provide a solution.
- We studied the package by working through its vignettes and reading the documentations and sometimes source code.
- We wrote R code to analyze the client’s data, using functions from the package. If the package turned out to be unhelpful, we researched another one and repeated step 2 until we solved the problem.
- We worked with the engineers on the client’s team to integrate our scripts into their production codebase.